Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs1041333 | chr6:44945206 | A/T | 0.000104 | 176 | 16.07 | 16.13 | 11.98 | KM Plot |
| PAAD | rs10416388 | chr19:41544764 | A/G | 3.9E-5 | 178 | 16.12 | 15.55 | 8.57 | KM Plot |
| PAAD | rs10419461 | chr19:36012533 | A/G | 4.82E-5 | 172 | 15.67 | 14.97 | 4.1 | KM Plot |
| PAAD | rs10445553 | chr19:49354329 | C/T | 1.22E-12 | 174 | 16.17 | 12.87 | 1.37 | KM Plot |
| PAAD | rs10463433 | chr5:111651545 | C/T | 6.4E-5 | 177 | 15.57 | 15.13 | 3.9 | KM Plot |
| PAAD | rs1047038 | chr7:154684303 | T/A | 1.67E-13 | 171 | 16.05 | 13.63 | 3.43 | KM Plot |
| PAAD | rs10497475 | chr2:179002948 | A/G | 1.33E-9 | 173 | 15.67 | 14.33 | 2.2 | KM Plot |
| PAAD | rs10519207 | chr2:70445020 | T/C | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs10520626 | chr15:86937763 | A/G | 3.4E-6 | 178 | 15.4 | 16.17 | 4 | KM Plot |
| PAAD | rs10546993 | chr3:15552365 | AGAAG/A | 0.000155 | 178 | 15.95 | 10.12 | 20.35 | KM Plot |
| PAAD | rs10560298 | chr19:44214094 | CATGAATGA/C | 3.84E-6 | 175 | 15.72 | 13.15 | 3.9 | KM Plot |
| PAAD | rs1058256 | chr2:70523972 | A/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs1059408 | chr2:70436818 | C/T | 0 | 178 | 15.33 | 17.45 | 1.03 | KM Plot |
| PAAD | rs10635986 | chr1:227503279 | T/TAAAA | 2.1E-5 | 177 | 15.53 | 15.87 | 3.9 | KM Plot |
| PAAD | rs10674483 | chr11:125568573 | A/ACT | 6.39E-5 | 175 | 16.12 | 14.18 | 5.03 | KM Plot |